Cytoscape: Analyzing and Visualizing Biological Network Data

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. The platform supports gene functional annotations from Gene Ontology (GO) and KEGG databases, biological models from Systems Biology Markup Language (SBML), protein-protein interactions from BIND and TRANSFAC databases. Additional features are available as plugins. Plugins are available for network and molecular profiling analyses, new layouts, additional file format support and connection with databases. See features and tutorial. More information about the Cytoscape platform and project is available on the Web at www.cytoscape.org.

Recommended plugins:
Agilent Literature Search

	Institute for Systems Biology University of California at San Diego
	Memorial Sloan-Kettering Cancer Center Agilent Technologies
	Institut Pasteur